PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00419.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 303aa    MW: 33658.1 Da    PI: 8.1547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00419.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.3e-1757107155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Rsa1.0_00419.1_g00008.1  57 TRYRGVRRRP-WGRYAAEIRDPA----SkERRWLGTFDTAEEAACAYDCAARAFRG 107
                              68********.**********83....25999********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-3057114No hitNo description
PfamPF008473.9E-1057107IPR001471AP2/ERF domain
PROSITE profilePS5103222.64258115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2958115IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2158116IPR016177DNA-binding domain
SMARTSM003804.0E-3358121IPR001471AP2/ERF domain
PRINTSPR003671.5E-95970IPR001471AP2/ERF domain
PRINTSPR003671.5E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEEALRKFSE STRSLITGYE PDHNLLTRNF TNTKPLNRKP ASKETRVTSL GTGSAPTRYR  60
GVRRRPWGRY AAEIRDPASK ERRWLGTFDT AEEAACAYDC AARAFRGSKA RTNFTYPVAL  120
AVPVPEHRFS FFPKKSSARP PVPLDHSSTQ EFYGTPAPQK INNDASYSSR KTAPFYSFNG  180
SSSYSEPKTA SISSSANDYD TEFFPQESSD SGLLQEVVKE FLKKNRNQSP PPPVIGHLEN  240
TGDLSALSNS FLQQKTEPIT SMLEGYGNNS YAGDFGYFDG VSPAADSDFT YGSEAWGYQD  300
MLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1759118666ATERF1
3gcc_A2e-1759118666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148555.11e-170PREDICTED: ethylene-responsive transcription factor ESR1-like
SwissprotQ9SAD43e-94ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLM4DTF81e-170M4DTF8_BRARP; Uncharacterized protein
STRINGBra019801.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-70ERF family protein